Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEKNIDVLQNWLKDQGAEVGFLTDPENIAYFSGYHSEPHERVLGLAVFSDSEPFLFTPALEVED--------VRGGDWTHPAYGYNDTENPFTIIADEIKKRVA-----NPS-KFAIEKKHMSVDRYEQLGGLFSGSSFIPIEHKIEQIRLIKTEAELKILKEAALLADYAVQVGVDEIAEGKTEAEIVAKIEYEMKKKGVTAMSFDTMVLTGKNGALPHGTPGETKIKKGDLVLFDLGVVHKGYCSDITRTVAFGDISDEQKKIYDTVLEAQIAAVEKVKAGVKASEIDLTARNIIREAGFG-DY----FPHRLGHGLGASVHEFPSITETNSMELQENMVFTIEPGIYVPGVAGVRIEDDLVVTKDGVQVLTEFPKTLQVIE |
| 4R60 Chain:A ((34-389)) | -QQRIERARVLMRAQGVDALLIGAGTSLRYFSGVPWGASERLVALLLTTEGDPVLICPAFEEGSLDAVLQLPVRKRLW-------EEHEDPYALVVQAMDEQHAHALALDPGIAFAV---HTGLRAH--LGTAIRDAGAI-----IDGCRMCKSPAELALMQQACDMTLLVQRLAAGIAHEGIGTDQLVRFIDEAHRALGADNGSTFCIVQFGHATAFPHGIPGVQHLRAGELVLIDTGCTVQGYHSDITRTWIYGTPSDAQQRIWELELAAQAAAFAAVRPGVACEAVDQAARAVLQAAGLGPDYRLPGLPHRTGHGCGLAIHEAPYLVRGNRQPLQPGMCASNEPMIVVPGAFGVRLEDHFYVTDTGAQWFT---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4R60.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -153452 for 2757 contacts (-55.7/contact) +
2D Compatibility (PS) -36930 + (NN) -17849 + (LL) 2060
1D Compatibility (HY) -19600 + (ID) 5700
Total energy: -231471.0 ( -83.96 by residue)
QMean score : 0.502
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