Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKWKKSLAGLSSYKPGKREEEVMAELGLTKITKLSSNENPLGTSPKVAALQANSNVETEIYPDGWASSLRKEVTNFYQLEEEELIFTAGVDELIELLTRVLLDTTKNTVMATPTFVQYRQNALIEGAEVREIPLLTDGAHDLEGMLNAIDEKT--TIVWICNPNNPTGNYIDLADIQAFLDKVPSDILVVLDEAYIEYVT-PQPKKHEKLI-RTYKNLIITRTFSKIYGLASARVGYGIADKEIINQLNIVRPPFNTTSIGQKLAIEAIKDQAFIEACRISNANGIKQYEAFAKRFEQVKL--YPANGNFVLIDLGIEARTIFSYLEKNGYITRSGAALGFPTA---VRITIGKEEENSAVIALLEKLL |
3LY1 Chain:A ((20-337)) | --------------------------------RINFNENPLGMSPKAQAAARDAVVKANRYAKNEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIALMGRYVAGEKINFSGVDAALASMNDSAFITYSKKSND---VSRQILLKALEDLKLPYLPSEGNFVFHQLVVPLKDYQTHMADAGVLI----GRAFPPADNWCRISLGTPQE------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LY1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -145956 for 2597 contacts (-56.2/contact) +
2D Compatibility (PS) -34811 + (NN) -23301 + (LL) 3760
1D Compatibility (HY) -16800 + (ID) 4550
Total energy: -221658.0 ( -85.35 by residue)
QMean score : 0.474
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