Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VVKTRKEKREYEEPADYDMSSEGQDEFNNEPPMLSRSDSRRGKKKTIFRYPLLNLLIVFFLLIPIVIVIVFVTVQNMGSSNEVKTETESTVNVSDNTQSKEEKEKAKKAAEEKAAAEKAAEEKKAAAEKAEADKKKQEEDAVKAANAKKEQEAAEEKAAADKAAAEKAAAEKAEQQKANEASQQKAGGSHTVKAGDTLYSIARSTYGQAGAAAGVEKIKQANGLGSDNVPVGTVLTIPQ
3VEM Chain:A ((1744-1785))
---------------------------------------------------------------------------------------------------RRESENSKKTFEEKKSILKAELERKMAEVQAEFRRKFHEVEA--------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3VEM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 11375 for 158 contacts (72.0/contact) +
2D Compatibility (PS) -5420 + (NN) -8884 + (LL) 13276
1D Compatibility (HY) 0 + (ID) 850
Total energy: 9497.0 ( 60.11 by residue)
QMean score : 1.087
(partial model without unconserved sides chains):
PDB file :
Tito_3VEM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VEM-query.scw
PDB file :
Tito_Scwrl_3VEM.pdb
: