Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKYCLVEKDTCIACGACSIHAPDVFDYDTEGLA---FNILDNNTGTKEIPEDLVEMVIDAEFACPSLSIKVSDSSFH
1SIZ Chain:A ((6-66))
-----VDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEVIED--------EELYNCAKEAMEACPVSAITIEEA---
General information:
TITO was launched using:
RESULT:
Template:
1SIZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39712 for 357 contacts (-111.2/contact) +
2D Compatibility (PS) -6240 + (NN) -2147 + (LL) 796
1D Compatibility (HY) -3600 + (ID) 1000
Total energy: -51903.0 ( -145.39 by residue)
QMean score : 0.350
(partial model without unconserved sides chains):
PDB file :
Tito_1SIZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIZ-query.scw
PDB file :
Tito_Scwrl_1SIZ.pdb
: