Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGKTLFDKLWNRHVIYGKEGEPQLLYVDLHLIHEVTSPQAFEGLRLENRPLRRPDKTFATMDHNVPTEDIFNIQDLVAKKQIEALQTNCAEFGVTLADMGSDRQGIVHMVGPETGLTQPGKVIVCGDSHTATHGAFGAIGFGIGSSEVEHVFATQTIWQQK-PKSMGIEINGKLPKGVYAKDIILHLIATYGVAFGTGYAVEYYGETIRNMSMEERMTICNMAIEGGAKMGMMAPDETTFEYVRGREYAPTDMDKAISDWKT-LQTDSDAEYDLHIKMDASILEPYVTWGTNPEMGVPFSKAFPEIKDMNYERAYEYMGLKPGQTAEQ----IELGYVFIGSCTNARLSDLEEAARIVK---GNKVKNNIRALVVPGSRQVRNAAESIGLDKIFIEAGFEWREPGCSMCLGM-NPDQVPDGVH--CASTSNRNFEGRQGKGARTH--LVSPAMAAAAAINGHFIDIRKVAVISGGN |
1AMJ Chain:A ((127-476)) | ------------------------------------------------------------------------------------LATAGAKYGVGFWRPGS---GIIHQIILEN-YAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAG-IPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRA--DIANLADEFKDHLVPDSGCHYDQLIEINLSELKPHINGPFTPDLAHPVAEV--------------------GSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAG--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1AMJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -155217 for 2872 contacts (-54.0/contact) +
2D Compatibility (PS) -36709 + (NN) -14385 + (LL) 8172
1D Compatibility (HY) -16000 + (ID) 5300
Total energy: -219439.0 ( -76.41 by residue)
QMean score : 0.379
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