Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLPKDLLYTEEHEWVKADDGSYVIGITDFAQDQLGDIVFVELPEVGDTVTKGDSIGSIESVKTVSDFYAPVTGKVVAVNETLEDEPELINSNPYDTGWILKLEEVEEADVKALLSSDDYEKVLD
1HPC Chain:A ((7-125))
------LKYAPSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSPDELESLLGAKEYTKFCE
General information:
TITO was launched using:
RESULT:
Template:
1HPC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47557 for 928 contacts (-51.2/contact) +
2D Compatibility (PS) -12621 + (NN) -970 + (LL) 204
1D Compatibility (HY) -10800 + (ID) 2800
Total energy: -74544.0 ( -80.33 by residue)
QMean score : 0.639
(partial model without unconserved sides chains):
PDB file :
Tito_1HPC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HPC-query.scw
PDB file :
Tito_Scwrl_1HPC.pdb
: