Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKITPPQPFLFEKGKRAVLLLHGFTGSSADVRILGRFLQENNYTCYAPQYRGHGVSPDLLLKTGPNDWWEDVLEAYDHLKSLGYTEIAVAGLSLGGLFSLKLGFSRP-LKGIIAMSTPTRMDSSSPIIQGFLDYVRNYKKLEGKTTEQIDAEMVAYKDAPMNTIAKLKDEISGVVAEIDMIYAPIMVVQGEKDDMVDVSGAQLIYDTVESTKKELHWFKESGHVITLDKERKEVNQAILTFLDSLDWQE
4KE9 Chain:A ((30-263))
------EPFYAENGPVGVLLVHGFTGTPHSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDMERTTFHDWVASVEEGYGWLKQRCQT-IFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDIPAIAAGMTGGGELPRYLDSI-GSDLKNPDVKELAYEKTPTASLLQLARLMAQTKAKLDRIVCPALIFVSDEDHVVPPGNADIIFQGISSTEKEIVRLRNSYHVATLDYDQPMIIERSLEFF-------
General information:
TITO was launched using:
RESULT:
Template:
4KE9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143722 for 2101 contacts (-68.4/contact) +
2D Compatibility (PS) -24277 + (NN) -1913 + (LL) 832
1D Compatibility (HY) -14000 + (ID) 3450
Total energy: -186530.0 ( -88.78 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_4KE9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KE9-query.scw
PDB file :
Tito_Scwrl_4KE9.pdb
: