Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKRGLLLVSVLMLFIFLTVACGSSEDNEESGEISTKEIELTVDDPIIPTDENGEATIEGTVDPKSKLTIDGKAVKKDDSGRFTYTYSLTNDNVAEVDVKLLAVRKNYKDEKYTITITNNSKAYNDNMVKQEAIQKEEAEKAEKERKEAEEKAKQEEEAAAAKAATTDENTPSDDTVYGTLASKDTLTKEGDAFYKDEALDVLYSTVENDEIFQVLIQLGDESTIRKDLDKNHLTELARDYMESDATLIQTVSDESFVYESPSINKTYTVDYMLNDEGYVIAVYVTQAK |
| 2GD1 Chain:O ((276-307)) | -------------------------------------------EEPLVSRDYNG-STVSSTIDALSTMVIDGKMVK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GD1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 5942 for 114 contacts (52.1/contact) +
2D Compatibility (PS) -3595 + (NN) -3727 + (LL) 18812
1D Compatibility (HY) -2800 + (ID) 700
Total energy: 13932.0 ( 122.21 by residue)
QMean score : 0.245
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