Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPEQIDGNKLDLEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGHVGFGTGKAQEVPDAIRKAVEDAKKNMVLVPTVDTTIPHTVVGHFGGGEILLKPASAGSGVTAGGPVRAVLELAGVADVSSKSLGSNTPINMVRATIDGIKQLKNAEDVAKLRGKTVEELLG
1FKA Chain:E ((1-152))
MPET------DFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMVEVPLQNGTIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLRTKADVERLR---------
General information:
TITO was launched using:
RESULT:
Template:
1FKA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71718 for 1224 contacts (-58.6/contact) +
2D Compatibility (PS) -15984 + (NN) -2369 + (LL) 640
1D Compatibility (HY) -12400 + (ID) 4100
Total energy: -105931.0 ( -86.54 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_1FKA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FKA-query.scw
PDB file :
Tito_Scwrl_1FKA.pdb
: