Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNEEKLVVLEGLTFDAPKTKEFAAFLKNISVDTKALIVVAGE-SENVELSARNLQGITVIPAESISVLEVAKHDKLIITKAAVEKVEEVLA
3J8G Chain:E ((1-201))
---MELVLKDAQSA--LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALED--VLIITGELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEMLA
General information:
TITO was launched using:
RESULT:
Template:
3J8G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73243 for 1365 contacts (-53.7/contact) +
2D Compatibility (PS) -21425 + (NN) -8919 + (LL) 272
1D Compatibility (HY) -16000 + (ID) 4500
Total energy: -123815.0 ( -90.71 by residue)
QMean score : 0.492
(partial model without unconserved sides chains):
PDB file :
Tito_3J8G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J8G-query.scw
PDB file :
Tito_Scwrl_3J8G.pdb
: