Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKLKKVAMGITVVMASSLLLVGCGSSDDSSKDKKSTDTKQTETKKTAKTDGTMTDGTYKLEEKNFDDKGWKGFMSIEVKDGKITKANYDYKNKDGKLKSEDADYEKAMKDKVGTGPQEYLKQLSDSLVKNQSAASVEVVSGATHSSDAFINYANQLIQAAQ------KADTTTISINNLAKMEDGTYKLEEQNYAHGYRVVFSMDVKDGKITKSDYNYVDKDGKLKSDDADYEKNMKAKSGTGPKEYIPALNKSLVEKQDVAAVDTVSGATNSSNQFKIYAAQLQNAAQNGNTDTIKVYNLVEAE |
| 4GF8 Chain:A ((341-412)) | ----------------------------------------------------------------------------------------------------------------------------DGFVETPSGKSFELLIQSPNGWTDFNNTVQLAVEQLQEVGIKAKARTPEFAVYNQAMLE-GTYDVAYTNYFHG------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GF8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 15517 for 370 contacts (41.9/contact) +
2D Compatibility (PS) -7108 + (NN) -2091 + (LL) 11700
1D Compatibility (HY) -3600 + (ID) 1050
Total energy: 13368.0 ( 36.13 by residue)
QMean score : 0.144
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