Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LKAVVKTNPGYDQMELKDVEEPQVYGDKVKIKVAFTGICGSDIHTFKGEYK-NPTTPVTLGHEFSGVVVEVGPDVTSIKVGDRVTSETTFETCGECIYCKEHDYNLCSNRRGIGTQANGSFAEFVLSREESCHVLDERISLEAAALTEPLACC---VHSALEKTTIRPDDTVLVFGPGPIGLLLAQVVKAQGATVIMAGITKDSDRLRLAKELGMDRIVDTLKEDLAEVVLGMTGGYGAERVFDCSGAVPAVNQGLPLTKKKGDFVQVGLFAEKKNAIDEESIIQREIAYIGSRSQKPSSWILALDLLANGKIDTDKMITKVYGLDDWREAFEAVMAGNEIKVLVKS |
3PII Chain:A ((11-327)) | -----------EPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAA---PIFCAGVTTYKALKVTGAKPGEWVAIYGIGGFGHVAVQYAKAMGLNVVAVDI--GDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSK--PAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNG-IKIIGSIVGTRKDLQEALQFAAEGKVKT---IIEVQPLEKINEVFDRMLKGQ-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PII.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -163357 for 2647 contacts (-61.7/contact) +
2D Compatibility (PS) -33362 + (NN) -14167 + (LL) 2636
1D Compatibility (HY) -18800 + (ID) 5150
Total energy: -232200.0 ( -87.72 by residue)
QMean score : 0.430
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