Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTIMLVCSAGMSTSLLVTKMEKAAEAQGIEAKIFAVAEAEAANHLD---EIDVLLLGPQVRFLEGNMKKKLEPKGIPLAVINSVDYGMMKGDKVLEQALELMK
3NBM Chain:A ((9-89))
---VLVLCAGSGTSAQLANAINEGANL--TEVRVIANSGAYGA-HYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEY-----------------
General information:
TITO was launched using:
RESULT:
Template:
3NBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54321 for 523 contacts (-103.9/contact) +
2D Compatibility (PS) -8453 + (NN) -4422 + (LL) 1780
1D Compatibility (HY) -5200 + (ID) 1050
Total energy: -71666.0 ( -137.03 by residue)
QMean score : 0.435
(partial model without unconserved sides chains):
PDB file :
Tito_3NBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NBM-query.scw
PDB file :
Tito_Scwrl_3NBM.pdb
: