Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIIFAKEDDLE-EIISSHPKILLNFWAEWCAPCRCFWPTLEQFAEMEEGNVQVVKINVDKQRALAQKFDVKGIPNSLVLVDGEIKGAIAGIVSCDELRSRFKSLAK
1SKR Chain:B ((4-100))
--IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLK--------
General information:
TITO was launched using:
RESULT:
Template:
1SKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75201 for 676 contacts (-111.2/contact) +
2D Compatibility (PS) -9860 + (NN) 1785 + (LL) 976
1D Compatibility (HY) -8400 + (ID) 1600
Total energy: -92300.0 ( -136.54 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_1SKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SKR-query.scw
PDB file :
Tito_Scwrl_1SKR.pdb
: