Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLENDIKKVLYSEEDIILKTKELGAKLTADYAGKNPLLVGVLKGSVPFMAELLKHIDTHVEIDFMVVSSYHGGTTSSGEVKILKDVDTNIEGRDVIFIEDIIDTGRTLKYLRDMFKYRQANSVKVATLFDKPEGRLVDIDADYVCYDIPNEFIVGFGLDYAENYRNLPYVG-VLKEEIYSK
3O7M Chain:A ((7-177))
----EIKDTLISEEQLQEKVKELALQIERDFEGEEIVVIAVLKGSFVFAADLIRHIKNDVTIDFISASSYG-------KVKLLKDIDVNITGKNVIVVEDIIDSGLTLHFLKDHFFMHKPKALKFCTLLDKPERRKVDLTAEYVGFQIPDEFIVGYGIDCAEKYRNLPFIASVVT------
General information:
TITO was launched using:
RESULT:
Template:
3O7M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122339 for 1260 contacts (-97.1/contact) +
2D Compatibility (PS) -17725 + (NN) -6099 + (LL) 480
1D Compatibility (HY) -20400 + (ID) 4050
Total energy: -170133.0 ( -135.03 by residue)
QMean score : 0.603
(partial model without unconserved sides chains):
PDB file :
Tito_3O7M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3O7M-query.scw
PDB file :
Tito_Scwrl_3O7M.pdb
: