Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MELIFRIFEMKKTLYITNKLFFANWFVPVIGAVLIQVIGIIVSRRLVVKLL-PDDYKFNLYIALLLFVPILASILLFLIYFQKRDFTSLGFTKDNNVLTTISGFITGSLLMFFIYICHWLSGFVEISSSNSFSFGPFFFLFLAY-FIQSLTEEILFRGYVMTTVTKFKGSFAGV--LCNSMLFSFIHFRNYGITAIALFNLFLLGIIFSILFNMTKNILFVTGVHTTWNFTMGCVLGNKVSGGYSPVSLFRI-TENSSFALWNGGDFGFEGGVLCSLIL-----VGCLAYFSLESVRVSVRY- |
| 4P4M Chain:A ((92-378)) | ----------KPKLKAIQELTQVHGFGPRAAAALFDREGIFTVDELLQKADSIPSLTDQQRVGIKYFYDINEKIPMQESVLHENYLREKCMEVLGK---DFSILICGSYRRR-----HPFSGDVDAILSRTLDAPPLSEPVAATGVLGHFVEFLESLKYLEATMAQGPLKYMGMGRLPPRINTKVYKARRVDIRLIE--TKSVPTAMLTFTGSKNFNVIMRQAAISK-----GYLLNEY--------GLFKLGTPEEARGKNAGEELGVPKDELEDKRVEVRSEQDVFDVLGMPYAKPENRDP |
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General information:
TITO was launched using:
| RESULT:
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Template: 4P4M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -205150 for 1881 contacts (-109.1/contact) +
2D Compatibility (PS) -26104 + (NN) 353 + (LL) 3392
1D Compatibility (HY) -1200 + (ID) 2150
Total energy: -230859.0 ( -122.73 by residue)
QMean score : 0.170
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