Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKKTFSAYNFLTALILCLLTVLFIFPFYWIMTGAFKSQPDTIIIPPQWWPKAPTLENFKALTVQNPALRWLWNSVFISIMTMFLVCCTSSMAGYVLAKKRFYGQKIL------FSLFIAAMALPKQVVLVP-LVRIINFMGIHDTLWAVILPLVGWPFGVFLMKQFSENIPTELLESAKIDGCGEIRTFINVAFPIVKPGFAALAIFTFINTWNDYFMQLVMLTSRNNLTISLGVATMQAEMATNYGLIMAGAALAAVPIVTVFLVFQKSFTQGITMGAVKG
4JBW Chain:G ((80-287))
------------------------------------------------------------------PVLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLVALYALFDRLGEYIPFIGLNTHGGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVNSYTLAVGMQQYLNPQNYLWGDFAAAAVMSALPITIVFLLAQRWLVN---------
General information:
TITO was launched using:
RESULT:
Template:
4JBW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147025 for 1409 contacts (-104.3/contact) +
2D Compatibility (PS) -20941 + (NN) -6368 + (LL) 5960
1D Compatibility (HY) -17600 + (ID) 2850
Total energy: -188824.0 ( -134.01 by residue)
QMean score : 0.191
(partial model without unconserved sides chains):
PDB file :
Tito_4JBW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JBW-query.scw
PDB file :
Tito_Scwrl_4JBW.pdb
: