Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANVKLFDQTGKEVSSVELNEAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAEDKFVAVENLSFAAPKTAEFASVLSALSIDSKVLVILEEGNEFAALSARNLPNVTVATATTASVLDIVNADKLLVTKEAISTIEGVLA
3J8G Chain:E ((10-201))
--------------SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALED-VLIITGELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEMLA
General information:
TITO was launched using:
RESULT:
Template:
3J8G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74470 for 1285 contacts (-58.0/contact) +
2D Compatibility (PS) -20557 + (NN) -6953 + (LL) 1184
1D Compatibility (HY) -13600 + (ID) 4200
Total energy: -118596.0 ( -92.29 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_3J8G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J8G-query.scw
PDB file :
Tito_Scwrl_3J8G.pdb
: