Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQQETRLKVADNSGAREILTIKVLGGSGRKFANIGDVIVASVKQATPGGAVKKGDVVKAVIVRTKTGARRPDGSYIKFDDNAAVIIRDD-KTPRGTRIFGPVARELREGGYMKIVSLAPEVL
3J8G Chain:K ((1-121))
MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAPE--
General information:
TITO was launched using:
RESULT:
Template:
3J8G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41907 for 891 contacts (-47.0/contact) +
2D Compatibility (PS) -12957 + (NN) -5207 + (LL) 368
1D Compatibility (HY) -13600 + (ID) 3800
Total energy: -77103.0 ( -86.54 by residue)
QMean score : 0.423
(partial model without unconserved sides chains):
PDB file :
Tito_3J8G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J8G-query.scw
PDB file :
Tito_Scwrl_3J8G.pdb
: