Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAFKDNAVELEERVVAINRVTKVVKGGRRLRFAALVVVGDRNGRVGFGTGKAQEVPEAIRKAVEAAKKNMVEVPMVGTTIPHEVRSEFGGAKVLLKPAVEGAGVAAGGAVRAVIELAGVADITSKSLGSNTPINIVRATVEGLKQLKRAEEVAALRGISVSDLA
1FKA Chain:E ((4-152))
-------TDFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMVEVPLQNGTIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLRTKADVERLRKGEAH---
General information:
TITO was launched using:
RESULT:
Template:
1FKA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78782 for 1204 contacts (-65.4/contact) +
2D Compatibility (PS) -15568 + (NN) -929 + (LL) 540
1D Compatibility (HY) -12400 + (ID) 4150
Total energy: -111289.0 ( -92.43 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_1FKA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FKA-query.scw
PDB file :
Tito_Scwrl_1FKA.pdb
: