Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVRPSVKPICEYCKVIRRNGRVMVICPTNPKHKQRQG
2YFV Chain:C ((4-12))
---------------------VVYIMSKENRLIPKLSD
General information:
TITO was launched using:
RESULT:
Template:
2YFV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 659 for 18 contacts (36.6/contact) +
2D Compatibility (PS) -1228 + (NN) -2624 + (LL) 1432
1D Compatibility (HY) -1200 + (ID) 100
Total energy: -3061.0 ( -170.06 by residue)
QMean score : 0.185
(partial model without unconserved sides chains):
PDB file :
Tito_2YFV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YFV-query.scw
PDB file :
Tito_Scwrl_2YFV.pdb
: