Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIYHMILCNSDIMKILAIIKSLPLNDCWLCAGTLRNFIWNKLSGINETLTSDIDVVFFDKNISYEETVVLEQ--QLKDNYPQYDWELKN------EFYMNTHSPNTPKYT-SSKDAISKFPEKCTAVGARLDDRNQLELYLPY-GEEEILNFIVSPTPYFEEDLLRYNVYLKRVDKKKWNNIWPRLTIIKK
1MIW Chain:A ((8-144))
-------------ALGIIQQLKQHG-YDAYFVGGAVRDLLL----GRP---IGDVDIATS-ALPEDVMA-IFPKTIDVGSKHGTVVVVHKGKAYEVTTFKTDG---S-VTFVRSLEEDLKRRDFTMNAIAMDEY--G--TIIDPFGGREAIRRRIIRTVGEAEKRFREDALRMMRAVRFVSELGFALAPDTEQ
General information:
TITO was launched using:
RESULT:
Template:
1MIW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49103 for 842 contacts (-58.3/contact) +
2D Compatibility (PS) -12350 + (NN) -2136 + (LL) 2128
1D Compatibility (HY) -4000 + (ID) 850
Total energy: -66311.0 ( -78.75 by residue)
QMean score : 0.320
(partial model without unconserved sides chains):
PDB file :
Tito_1MIW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MIW-query.scw
PDB file :
Tito_Scwrl_1MIW.pdb
: