Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVRGFELVSQFSNKELLPKRETAHAAGYDLKVA--KKTVIEPGEITLVPTGIKAHM-QPGEVLYLYDRSSNPRKKGIVLINSVGVIDGDYYNNQVNEGHIFAQMQNITDQAVILEEGERIVQAVFAP-----FLLADDDQATGMRTGGFGSTGK
4LHR Chain:A ((21-140))
---------------RDYLPKYATTGSAGLDLRACLDAPVTLKPGDTALVPTGLAIHLADPGYAALILPRSGLGHKHGIVLGNLVGLIDSDY------QGELMISTWNRGQTEFVLNPFERLAQLVIVPVVQATFNIVGDF---------------
General information:
TITO was launched using:
RESULT:
Template:
4LHR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53795 for 727 contacts (-74.0/contact) +
2D Compatibility (PS) -11778 + (NN) -1301 + (LL) 1284
1D Compatibility (HY) -7600 + (ID) 2100
Total energy: -75290.0 ( -103.56 by residue)
QMean score : 0.345
(partial model without unconserved sides chains):
PDB file :
Tito_4LHR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LHR-query.scw
PDB file :
Tito_Scwrl_4LHR.pdb
: