Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGIIGVGKMASAIIQGLKQTQHDIVISGSCLERSKEIAERLDVTYAESHQSL--INQADIIMLGIKPQLFEKVLLPLDITKPII-SMAAGISLARLSQLTRSDLPLIRIMPNINAQILQSCTAICYNNHVSDELRQLTKEITDSFGSSFDIA-ETNFDTFTALAGSSPAYIYLFIEALAKAGVKYGFPKEQALSIVGQTVLASSQNLLQGQNSTSDLIDNICSPGGTTIAGLLDLEKNGLTHSVISAIDATIEKAKKL
1YQG Chain:A ((20-257))
------------------VKQGGYRIYIANRGAEKRERLEKELGV---ETSATLPELHSDDVLILAVKPQDMEAACKNIRTNGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTVWLDDEEKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKGAVALAEQTGEDFEKLQKNVTSKGGTTHEAVEAFRRHRVAEAISEGVCACVRRSQEM
General information:
TITO was launched using:
RESULT:
Template:
1YQG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114483 for 1524 contacts (-75.1/contact) +
2D Compatibility (PS) -25152 + (NN) -6137 + (LL) 1736
1D Compatibility (HY) -15200 + (ID) 2800
Total energy: -162036.0 ( -106.32 by residue)
QMean score : 0.389
(partial model without unconserved sides chains):
PDB file :
Tito_1YQG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YQG-query.scw
PDB file :
Tito_Scwrl_1YQG.pdb
: