Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSTVKVVYFSSKSNNTHRFVQKLAWSNQRIPSDGSNILVTEDYILIVPTYAGGGDDTKGAVPKQVVQFLNVRQNREHCQGVISSGNTNFGDTYAIAGPIIARKLNVPLLHQFELLGTQEDVTRVKELLCQFTRKDK
1RLJ Chain:A ((13-122))
-------IIFDSKTGNVQRFVNKTGFQQIRKVDEMDHV----DTPFVLVTYTTNF----GQVPASTQSFL--EKYAHLLLGVAASGNKVWGDNFAKSADTISRQYQVPILHKFELSGTSKDV----ELFTQEVERVV
General information:
TITO was launched using:
RESULT:
Template:
1RLJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65524 for 849 contacts (-77.2/contact) +
2D Compatibility (PS) -11813 + (NN) -5415 + (LL) 1612
1D Compatibility (HY) -6800 + (ID) 2050
Total energy: -89990.0 ( -106.00 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_1RLJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RLJ-query.scw
PDB file :
Tito_Scwrl_1RLJ.pdb
: