Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRKPFIAGNWKMNKNPEEAKAFIEAVASKLPSSEL--VEAGIAAPALTLSTVLEAAKGSELKI--AAQNSYFENSGAFTGENSPKVLAEMGTDYVVIGHSERRDYFHETDQDINKKAKAIFANGLTPIICCGESLETYEAGKAVEFVGAQVSAALAGLSEEQVSSLVIAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQAVADKVRVQYGGSVKPENVAEYMACPDVDGALVGGASLEAESFLALLDFVK
4Y9A Chain:A ((7-258))
--RTPLMAGNWKMNLNHLEAIAHVQKLAFALADKDYDAVEVAVLAPFTDLRSVQTLVDGDKLKIKYGAQDISAHDGGAYTGEISGPMLAKLKCTYVAVGHSERRQYHAETDEIVNAKVKAAYKHGLTPILCVGEELDVREAGNHVEHTLAQVEGGLKDLAAEQAESVVIAYEPVWAIGTGKVCGADDAQEVCAAIRGKLAELYSQELADKVRIQYGGSVKSGNVAEIMAKPDIDGALVGGASLDSDEFVKIVRFRD
General information:
TITO was launched using:
RESULT:
Template:
4Y9A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112360 for 2119 contacts (-53.0/contact) +
2D Compatibility (PS) -27647 + (NN) -16051 + (LL) 180
1D Compatibility (HY) -19600 + (ID) 6350
Total energy: -181828.0 ( -85.81 by residue)
QMean score : 0.624
(partial model without unconserved sides chains):
PDB file :
Tito_4Y9A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Y9A-query.scw
PDB file :
Tito_Scwrl_4Y9A.pdb
: