Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKTYEKIYQILSKNN-NFISGETMANQLNISRTAIWKGIKTLEELGLEIESVTNKGYRLVSGDILLPEQLEQEIGIKVSLNNNSA------------STQLDAKMGIESKLKTPHLFLAPNQKKAKGRFDRPFFTSNQGGIYMSLLLQPNVPIEDIKPYTVMVASSAVKAISRLTGITPEIKWVNDIYLDNKKIAGILTEAIASVESGLVTNVIIGLGINF--YIKEFPRALTKRAGSL-FTEQPTITRNQ----LITEI---WNLFFNIPLEDHLKVYREKSLVLDKTVSFMDGQTMYSGKAIDITDKGYLVVELDDGQLKTLRSGEISLSSW |
3V8K Chain:A ((9-329)) | -KYSQDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEGCKIDSVNHKGHLLQQ----LPDIWYQ--GIIDQYTKSSALFDFSEVYDSIDSTQLAAKKSLVGN-QSSFFILSDEQTKGRGRFNRHWSSSKGQGLWMSVVLRPNVAFSMISKFNLFIALGIRDAIQHFSQDEVKVKWPNDIYIDNGKVCGFLTEMVANNDG--IEAIICGIGINLTQQLENFDESIRHRATSIQLHDKNKLDRYQFLERLLQEIEKRYNQFLTLPFSEIREEYIAASNIWNRTLLFTENDKQFKGQAIDLDYDGYLIVRDEAGESHRLISADIDF--- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3V8K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -133012 for 2178 contacts (-61.1/contact) +
2D Compatibility (PS) -31415 + (NN) -7995 + (LL) 928
1D Compatibility (HY) -26400 + (ID) 5300
Total energy: -203194.0 ( -93.29 by residue)
QMean score : 0.484
|
|
|