Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTVYLSLGSNIGDRETFLKQALFSIDHLQKTKVAQISAIYETAAWGNTNQEDFFNICCQVETDLAPFELLDYCQEIEKRLKRVRH-EHWGPRTIDIDILLFGNQVINQEDLVVPHPYMTKRAFVLVPLLEIAPQLSLPNGSKLEDYL-----EKLNLGEVHYLKPVE
4M5K Chain:A ((4-160))
MTVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW---------
General information:
TITO was launched using:
RESULT:
Template:
4M5K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123136 for 1169 contacts (-105.3/contact) +
2D Compatibility (PS) -16143 + (NN) -7315 + (LL) 536
1D Compatibility (HY) -14800 + (ID) 3400
Total energy: -164258.0 ( -140.51 by residue)
QMean score : 0.570
(partial model without unconserved sides chains):
PDB file :
Tito_4M5K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M5K-query.scw
PDB file :
Tito_Scwrl_4M5K.pdb
: