Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLIKYILSFENIIAIFFIVLFGLLLIRIEPVNNSVYSIISGIAIDKVIIVIISSFVIAIFSAFFIIDILEIIFHLKIDSLFLIAYLFFAISLGFGLLKVLTESQFSLLSAFIAFPLFLIFPKLFEKIVNNRKINQKDNKNQK
2KHR Chain:A ((22-37))
------------------------------------------------------------------------------------------------------DEDQHSLWPVFADIPAGWRVVHGEASRAACLDYVEKNWTDLR
General information:
TITO was launched using:
RESULT:
Template:
2KHR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2533 for 37 contacts (-68.5/contact) +
2D Compatibility (PS) -1568 + (NN) -200 + (LL) 11644
1D Compatibility (HY) -400 + (ID) 300
Total energy: 6643.0 ( 179.54 by residue)
QMean score : -0.160
(partial model without unconserved sides chains):
PDB file :
Tito_2KHR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KHR-query.scw
PDB file :
Tito_Scwrl_2KHR.pdb
: