Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRKVRRHFTDDFKQQIVDLYNVGRKRSSLIKVYELTPSTFDKWVRQAKTTGSFKSVDNLTDEQRELIELRKH-NKELEMQLDILKQAAVIMAQKGK
4DVZ Chain:A ((596-638))
----------------------------------------FNKAVAEAKSTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLE--------------
General information:
TITO was launched using:
RESULT:
Template:
4DVZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 749 for 191 contacts (3.9/contact) +
2D Compatibility (PS) -4707 + (NN) -2864 + (LL) 4604
1D Compatibility (HY) -800 + (ID) 700
Total energy: -3718.0 ( -19.47 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_4DVZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DVZ-query.scw
PDB file :
Tito_Scwrl_4DVZ.pdb
: