Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIDILTLFPEMF-APLEHSIVGKAKERGLLEINYHNFRE-NAEKSRHVDDEPYGGGQGMLLRAQPIFDTID---KIDAQKARVILLDPAGRTFDQDFAEELSKEDELIFICGHYEGYDER-IKSLVTDEVSLGDFVLTGGELAAMTMVDATVRLIPEVIGKETSHQDDSFSSGLLEYPQYTRPYDYLGMTVPDVLMSGHHENIRKWRLEQSLRKTLERRPDLLENYAMTDEERLILEKIKTEIERTDTVNEQNNL
4YVH Chain:A ((21-263))
MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVL--------DSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQRKLLKEAQAEHNS----------
General information:
TITO was launched using:
RESULT:
Template:
4YVH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129786 for 1628 contacts (-79.7/contact) +
2D Compatibility (PS) -24318 + (NN) -7986 + (LL) 880
1D Compatibility (HY) -23200 + (ID) 6000
Total energy: -190410.0 ( -116.96 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_4YVH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YVH-query.scw
PDB file :
Tito_Scwrl_4YVH.pdb
: