Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAIDKLVKASHLIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPFAVKEGLLILE
1LQY Chain:A ((1-180))
------------MITMKDIIKEGHPTLRKVAEPVPLPPSEEDKRILQSLLDYVKMSQDPELAAKYGLRPGIGLAAPQINVSKRMIAV---HVTDENGT----LYSY--ALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVLRYARITVTGTTLDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDRINPADPFQVPDGAIPIG
General information:
TITO was launched using:
RESULT:
Template:
1LQY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69571 for 1415 contacts (-49.2/contact) +
2D Compatibility (PS) -18883 + (NN) -4310 + (LL) 1448
1D Compatibility (HY) -20400 + (ID) 5100
Total energy: -116816.0 ( -82.56 by residue)
QMean score : 0.569
(partial model without unconserved sides chains):
PDB file :
Tito_1LQY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LQY-query.scw
PDB file :
Tito_Scwrl_1LQY.pdb
: