Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIIIQRVNQASVSIEDDVVGSIEK----------GLVLLVGIAPEDTTEDIAYAVRKITSMRIFSDDEGKMNLSIQDIKGSVLSISQFTLFADTKKGNRPAFTGAADPVKANQFYDIFNQELA---NHVSVETGQFGADMQVSLINDGPVTIVLDTKNK
3KO3 Chain:A ((1-157))
MRVVIQRVKGAILSVR--------KELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHDI
General information:
TITO was launched using:
RESULT:
Template:
3KO3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86271 for 946 contacts (-91.2/contact) +
2D Compatibility (PS) -14941 + (NN) -7173 + (LL) 340
1D Compatibility (HY) -14400 + (ID) 2800
Total energy: -125245.0 ( -132.39 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_3KO3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KO3-query.scw
PDB file :
Tito_Scwrl_3KO3.pdb
: