Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFINNYTLKIGNRILLENTNLDFEEGEINHLLGRNGSGKSQLAKDFIINR-GNYFSNDIYEDTL-----------------IISSYSNLP-----SDVTINDLERTIPW---KLSKEIYQLLN----INQISKTVKLKQLSDGQKQKVKLLVLLSLDKHIIILDEITNALDKKSVDEINVFLQNYIQYYPEKIIINISHDINNIRSLKGNYFLIDNQKICKVDTLDDAISWYLGE
4U02 Chain:A ((19-218))
--------------VLKGIHLEVAPGEKLVIIGPSGSGKSTLIR--TINRLEDFQEGEVVVDGLSVKDDRALREIRREVGMVFQQFNLFPHMTVLENVTLAPM-RVRRWPREKAEKKALELLERVGILDQARKYPA--QLSGGQQQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLDVMRDLAQGG--MTMVVVTHEMGFAREVADRVVFMDGGQIVEEGRPEEIFTRPKEE
General information:
TITO was launched using:
RESULT:
Template:
4U02.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73403 for 1248 contacts (-58.8/contact) +
2D Compatibility (PS) -18114 + (NN) -6595 + (LL) 1388
1D Compatibility (HY) -12800 + (ID) 2450
Total energy: -111974.0 ( -89.72 by residue)
QMean score : 0.409
(partial model without unconserved sides chains):
PDB file :
Tito_4U02.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4U02-query.scw
PDB file :
Tito_Scwrl_4U02.pdb
: