Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANPISIDTEMITLGQFLKLADVIQSGGMAKWFLSEHEVLVNDEPDNRRGRKLYVG--DVVEIEGFGSFQVVN
3JAM Chain:J ((105-164))
---------LERRLQTQVYKLGLAKSVHHARVLISQRHIAVGKQIVNIPSFMVRLESEKHIDFARTSPF----
General information:
TITO was launched using:
RESULT:
Template:
3JAM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20380 for 371 contacts (-54.9/contact) +
2D Compatibility (PS) -6025 + (NN) -2022 + (LL) 912
1D Compatibility (HY) -1200 + (ID) 350
Total energy: -29065.0 ( -78.34 by residue)
QMean score : 0.166
(partial model without unconserved sides chains):
PDB file :
Tito_3JAM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JAM-query.scw
PDB file :
Tito_Scwrl_3JAM.pdb
: