Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILMIDNYDSFTYNLVQYLGELGEELVVKRNDSITIDEIEELSPDFLMISPGPCSPDEAGISLEAIKHF-AGKIPIFGVCLGHQSIAQVFGGDVVRAERLMHGKTSDIEHDGKTIFEGLKNPLVATRYHSLIVKPETLPSCFTVTAQTK-EGEIMAIRHNDLPIEGVQFHPESIMTSFGKEMLRN----FIETYRKEVIA
1JDB Chain:C ((204-379))
-------------NILRMLVDRGCRLTIVPAQT-SAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVV------MITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRK----
General information:
TITO was launched using:
RESULT:
Template:
1JDB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83042 for 1342 contacts (-61.9/contact) +
2D Compatibility (PS) -18204 + (NN) -5783 + (LL) 1908
1D Compatibility (HY) -7600 + (ID) 2450
Total energy: -115171.0 ( -85.82 by residue)
QMean score : 0.460
(partial model without unconserved sides chains):
PDB file :
Tito_1JDB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JDB-query.scw
PDB file :
Tito_Scwrl_1JDB.pdb
: