Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYDVVIPAAGQGKRMKAGRNKLFIELKGDPVIIHTLRVFDSHRQCDKIILVINEQEREHFQQLLSDYPFQTSIELVAGGDERQHSVYKGLKAVKQEKIVLVHDGARPFIKHEQIDELIA--EAEQTGAAILAVPVKDTIKRVQDLQ--VSETIERSSLWAVQTPQAFRLSLLMKAHAEAERKGFLGTDDASLVEQMEGGSVRVVEGSYTNIKLTTPDDLTSAEAIMESESGNKHV
1INI Chain:A ((11-224))
-----VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHP---QITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTG-GILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYC-GFHPQLVEGRADNIKVTRPEDLALAE------------
General information:
TITO was launched using:
RESULT:
Template:
1INI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99552 for 1674 contacts (-59.5/contact) +
2D Compatibility (PS) -22462 + (NN) -8140 + (LL) 1696
1D Compatibility (HY) -12000 + (ID) 4000
Total energy: -144458.0 ( -86.30 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_1INI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1INI-query.scw
PDB file :
Tito_Scwrl_1INI.pdb
: