Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYDKVSQAKSIIIGTKQTVKALKRGSVKEVVVAKDADPI-LTSSVVSLAEDQGISVSMVESMKKLGKACGIEVGAAAVAIIL
1SDS Chain:A ((19-97))
---DAVAKAQKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQDLGKAAGLEVAASSVAII-
General information:
TITO was launched using:
RESULT:
Template:
1SDS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71211 for 596 contacts (-119.5/contact) +
2D Compatibility (PS) -8551 + (NN) -3227 + (LL) 448
1D Compatibility (HY) -4400 + (ID) 1600
Total energy: -88541.0 ( -148.56 by residue)
QMean score : 0.797
(partial model without unconserved sides chains):
PDB file :
Tito_1SDS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SDS-query.scw
PDB file :
Tito_Scwrl_1SDS.pdb
: