Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPTINQLIRKGRVSKVENSKSPALNKGYNSFKKEHTNVSSPQKRGVCTRVGTMTPKKPNSALRKYARVRLTNGIEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTAGVENRAQGRSKYGTKKPKAK
3J0D Chain:I ((2-123))
--TVNQLVRKPRARKVAKSNVPALE-------------ACPQKRGVCTRVYTTTPKKPNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRGALDCSGVKDRKQARSKYGVKRPKA-
General information:
TITO was launched using:
RESULT:
Template:
3J0D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15889 for 797 contacts (-19.9/contact) +
2D Compatibility (PS) -12852 + (NN) -4880 + (LL) 580
1D Compatibility (HY) -10000 + (ID) 4600
Total energy: -47641.0 ( -59.78 by residue)
QMean score : 0.467
(partial model without unconserved sides chains):
PDB file :
Tito_3J0D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J0D-query.scw
PDB file :
Tito_Scwrl_3J0D.pdb
: