Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRIDPSKLELEERLVTVNRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLIEVPMVGTTIPHEIIGRFGAGNILLKPASEGTGVIAGGPVRAVLELAGVADILSKSLGSNTPINMIRATLQGLSELKRAEDVAKLRGKSVEELLG
4K0K Chain:E ((1-148))
---------DFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMVEVPLQNGTIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLRTKADVERLR---------
General information:
TITO was launched using:
RESULT:
Template:
4K0K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70240 for 1165 contacts (-60.3/contact) +
2D Compatibility (PS) -16026 + (NN) -4430 + (LL) 1052
1D Compatibility (HY) -13600 + (ID) 4150
Total energy: -107394.0 ( -92.18 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_4K0K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K0K-query.scw
PDB file :
Tito_Scwrl_4K0K.pdb
: