Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKTPFERLALYDINASIKEGSYVAVIGHTGSGKSTLLQHLNGLLKPTKGQISLGSTVIQAGKKNKDLKKLRKKVGIVFQ----FPEHQLFEETVLKDISFGPMNFGVKKEDAEQKAREMLQLVGLSEELLDRSPFELSGGQMRRVAIAGVLAMDPEVLVLDEPTAGLDPRGRKEIMDMFYELHQRGNLTTILVTHSMEDAAAYADEMIVMHKGTIQASGSPRDLFLKGEEMAGWGLDLPETIKFQRHLEAALGVRFNEPMLTIEDAAAEIRALFQGEKTL |
4YMV Chain:J ((16-228)) | --------VLKGVTLKVNKGEVVVIIGPSGSGKSTLLRCINLLEEPTKGEVFIDGVKINNGKVN--INKVRQKVGMVFQHFNLFPHLTAIENITLAPVKVKKMN----KKEAEELAVDLLAKVGLLDKK-DQYPIKLSGGQKQRLAIARALAMQPEVMLFDEPTSALDPEMVKEVLNVMKQLANEG-MTMVVVTHEMGFAREVGDRVIFMDDGVIVEEGTPEEIFYRAK--------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YMV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -95601 for 1649 contacts (-58.0/contact) +
2D Compatibility (PS) -23677 + (NN) -17450 + (LL) 5404
1D Compatibility (HY) -20000 + (ID) 4350
Total energy: -155674.0 ( -94.41 by residue)
QMean score : 0.585
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