Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAQVQYYGTGRRKSSVARVRLVPGEGRIVVNNREISEHIPSAALIEDIKQPLTLTETAGTYDVLVNVHGGGLSGQAGAIRHGIARALLEADPEYRTTLKRAGLLTRDARMKERKKYGLKGARRAPQFSKR
1IBK Chain:I ((3-128))
----QYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYITVRGGGKSGQIDAIKLGIARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR
General information:
TITO was launched using:
RESULT:
Template:
1IBK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51906 for 924 contacts (-56.2/contact) +
2D Compatibility (PS) -13247 + (NN) -3568 + (LL) 664
1D Compatibility (HY) -6400 + (ID) 3300
Total energy: -77757.0 ( -84.15 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_1IBK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IBK-query.scw
PDB file :
Tito_Scwrl_1IBK.pdb
: