Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSKAKTLLMSCFLLLSVTACAPKDQAADMDYDQTKKMVVDILKTDDGKKAIKELLND-DAMNEALVIDQDAIKGTIEKTLTSKKGEEFWKNIFEDTDFAEGFAKTLQTEHEKVIKKLMKDPDYQKMLMSVMQDPGMDKKYSQLAKSQEFRSYLEEVINETLSSPLYKKQFEDELKKAAKDTAKESE |
2LV3 Chain:A ((54-123)) | --------------------------------------------------VKELFSSLGVVYNILELDQVDDGASVQEVLTEISNQKTVPNIFVNKVHVGGCDRTFQAHQNGLLQKLLQD------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2LV3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 6782 for 412 contacts (16.5/contact) +
2D Compatibility (PS) -7124 + (NN) -1517 + (LL) 8612
1D Compatibility (HY) -5200 + (ID) 850
Total energy: 703.0 ( 1.71 by residue)
QMean score : 0.126
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