Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRKTIFAFLTGLMMFGTITAASASPDSKNQTAKKPKVQTGIDTLLPDYKKQLKGKRIGLITNPAGVNTSLKSSVDILYENPDIKLTALFGPEHGVRGDAQAGDEVGSYIDEKTGVPVYSLYGKTKKPTPEMLKNVDILMFDIQDVGTRFYTYIYTMAYAMEAAKENGIPFMVLDRPNPQGGNHIEGPILEPEYASFVGLYPIPLKHGMTIGELASLFNKEFSI--DADLTVVKMKHWKRKMDFDDTRLPFVLPSPNMPTVESTFVYPATGLIEG-TNISEGRGTTKPFELIGAPFIKSTELEETLNSLHLPGVTFRAASFTPTFSKHQGTLCHGVQLYVTDRDKFEAVKTGLSVIKTIHDLYPEDFEFLST-----GSFDKLAGNGWIRTKIENGTSVENIINSYEKTLQQFSKTRKKYLIY |
| 4K05 Chain:A ((9-398)) | --------------------------------PRIRIKTGIEVLKEQNFKCLEGKRVGLITNPTGVDNHLISTIDILHEAPNVNLVALYGPEHGVRGDVHA-------NDSSTGLPVYSLYGKTRKPTPEMLKDIDVLVYDIQDIGCRSFTYISTMGVAMEAAAENNKEFIVLDRPNPIGGLKIEGNVVEDGYISFVSQFKIPYLYGLTCGELALMLNGEQMLSKPCNLHVVKMKGWKRKMDYVQTGLQWIPSSPHIPHPHSAFFYPVSGILGELGYMSIGVGYTIPFQMFAARWVEAEKLADNLNRLHLPGVIFRPMHLKPFYSVGKEEHLQGVQVHIVDFNKASLSEIQFYVMQEVTALYPDRAVFDHADKERFHMFDLVSGSKEIRERFSQRNRWEDVRDYWYKDVDDFRRLSQKYYLY |
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General information:
TITO was launched using:
| RESULT:
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Template: 4K05.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -150869 for 3327 contacts (-45.3/contact) +
2D Compatibility (PS) -39602 + (NN) -17791 + (LL) 2324
1D Compatibility (HY) -36400 + (ID) 8400
Total energy: -250738.0 ( -75.36 by residue)
QMean score : 0.548
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