Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
METNKPTLYWSLLMFKDWNFYIASTLKGLVFVGSQNKPIEELFEWARKRFPGSLLVEDDDKLEPYAVEITQYLEGKRKNFTVPVEYAGTQFQLAVWNALCEIPYGQTKSYSDIANDINKPAAVRAVGAAIGANPVLITVPCHRVIGKNGSLTGYRGGFEMKTLLLDLEKRASSEMDVPH
4ZYH Chain:A ((37-145))
--------------------------------------------------------RDDSSFTEFFHKLDLYFEGKPINLREPINLKTYPFRLSVFKEVMKIPWGKVMTYKQIADSLG--TSPRAVGMALSKNPILLIIPLHRVIAENG-IGGYSRGVKLKRALLELE-----------
General information:
TITO was launched using:
RESULT:
Template:
4ZYH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61985 for 729 contacts (-85.0/contact) +
2D Compatibility (PS) -11862 + (NN) -6172 + (LL) 4736
1D Compatibility (HY) -12400 + (ID) 2000
Total energy: -89683.0 ( -123.02 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_4ZYH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ZYH-query.scw
PDB file :
Tito_Scwrl_4ZYH.pdb
: