Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIICLKKSSKRLSTSQAVLVTDIADTG-ITAAAGADIIAATAAVRAKEDTTTVMAAVIVTNAGATAAVNPKKVLVPLLGQGFFYVTD
1VRQ Chain:A ((298-359))
-------------------LVSELAASGGVVAVIDARQNISAAAAQAVTDGVTVLTGSVVANTEADASGELSAVLVATLDE-------
General information:
TITO was launched using:
RESULT:
Template:
1VRQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20550 for 318 contacts (-64.6/contact) +
2D Compatibility (PS) -6209 + (NN) 2123 + (LL) 1984
1D Compatibility (HY) -2400 + (ID) 1000
Total energy: -26052.0 ( -81.92 by residue)
QMean score : 0.023
(partial model without unconserved sides chains):
PDB file :
Tito_1VRQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VRQ-query.scw
PDB file :
Tito_Scwrl_1VRQ.pdb
: