Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKRYRTLLFDVDDTILDFQAAEALAL----RLLFEDQNIPLTNDM---KAQYKTINQGLWRAFEEGKMTRDEVVNTRFSALLKEYGYEADG-ALLEQKYRRFLEEGHQL-----IDGAFDLISNLQQQFDLYIVTNGVSHTQYKRLRDSGLFPFFKDIFVSEDTGFQKPMKEYFNYVFERIPQFSAEHTLIIGDSLTADIKGGQLAGLD-TCWMNPDMK-PNVPEIIPTYEIRKLEELYHIL-NIENTVSC
2GFH Chain:A ((15-257))LSRVRAVFFDLDNTLIDTAGASRRGMLEVIKLLQSKYHYKEEAEIICDKVQVKLSKE----CFH----CITDVRTSHWEEAIQETKGGADNRKLAEECY--FLWKSTRLQHMILADDVKAMLTELRKEVRLLLLTNGDRQTQREKIEACACQSYFDAIVIGGEQKEEKPAPSIFYHCCDLLGVQPGD-CVMVGDTLETDIQGGLNAGLKATVWINKSGRVPLTSSPMPHYMVSSVLELPALLQSIDCKVS-


General information:
TITO was launched using:
RESULT:

Template: 2GFH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1055 -111946 -106.11 -502.00
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain A : 0.74

3D Compatibility (PKB) : -106.11
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.74
QMean score : 0.436

(partial model without unconserved sides chains):
PDB file : Tito_2GFH.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2GFH-query.scw
PDB file : Tito_Scwrl_2GFH.pdb: