Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MKKAYLTVCSNQQIADRVFQMVLKGELVQGFTTPGQFLHLKVSEAVTPLLRRPISIADVNFEKNEVTIIYRVDGEGTRLLSLKQQGELVDVLGPLGN-------GFPVNEVQPGKTAL-LVGGGVGVPPLQELSKRLI----EKGVNVIHVLGFQSAKDVFYEEECRQYGDTYV-------------ATADGSYGETGFVTDVIKRKKL----EFDILLSCGPTPMLKALKQEYAHKEVYLSMEERMGCGIGACFACVCHTNESETSYVKVCLDGPVFKAQEVAL 1CNF Chain:A ((98-249)) ----------------------------------------------------------------------------TQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTEDDILLRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALACGPPPMIQ---------------------------------------------------------

General information: TITO was launched using: RESULT: Template: 1CNF.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 336 -71612 -213.13 -582.21 target 2D structure prediction score : 0.54 Monomeric hydrophicity matching model chain A : 0.62 3D Compatibility (PKB) : -213.13 2D Compatibility (Sec. Struct. Predict.) : 0.54 1D Compatibility (Hydrophobicity) : 0.62 QMean score : 0.434

(partial model without unconserved sides chains): PDB file : Tito_1CNF.pdb: (Unconserved sides chains are recalculated) : Sequence: align-1CNF-query.scw PDB file : Tito_Scwrl_1CNF.pdb: