Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequenceMDPSTLMILAIVAVAIIVLAVFFTFVPVMLWISALAAGVKISIFTLVGMRLRRVIPNRVVNPLIKAHKAGLNVGTNQLESHYLAGGNVDRVVNALIAAQRANIELTFERCAAIDLAGRDVLEAVQMSVNPKVIETPFIAGVAMDGIEVKAKARITVRANIERLVGGAGEETIVARVGEGIVSTIGSSDNHKKVLENPDMISQTVLGKGLDSGTAFE--------ILSIDIADVDIGKNIGAILQTDQAEADKNIAQAKAEERRAMAVAQEQEMRARVEEMRAKVVEAEAEVPLAMAEALREGNIGVMDYMNIKNIDADTEMRDSFGKLTKDPSDEDRKS
2DY1 Chain:A ((128-227))----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PRMVVVTKLDKGGDYYALLEDLRSTLGPILPIDLPLYEGGKWVGLI----DVFHGKAYRYENGEEREAEVPPEERE---RVQRFRQEVLEAIVETDEGLLEKYLEGE------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 2DY1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 252 7631 30.28 82.95
target 2D structure prediction score : 0.47
Monomeric hydrophicity matching model chain A : 0.55

3D Compatibility (PKB) : 30.28
2D Compatibility (Sec. Struct. Predict.) : 0.47
1D Compatibility (Hydrophobicity) : 0.55
QMean score : 0.339

(partial model without unconserved sides chains):
PDB file : Tito_2DY1.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2DY1-query.scw
PDB file : Tito_Scwrl_2DY1.pdb: