Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMEWNKTKSIFIVAFLILDIFLGYQFFQKWQATGKEYEVIKNDVEHDMKADHITYEGLNKEATEGYRITANQKSFSKEEIEALKDQKPLMDMPSDDHKVTSLKMKFANPIALSKKDIEDDAQALVSSKIQDG----EKYKLWKV------------DKSKKEIIFFQTYEGHYIYQKTD-----NPSNMIGQVVLHLNGKNEVVSYDQTTLETFKQI-QKESLITEMDAVELLYYQN---QLKEYSTVKSCKFGYVAQYPLTSTQVLAPVWRITVEYEKKVNGEKK---TVQEYFTVNALESTILDTDQ
5COZ Chain:A ((163-357))--------------------------------------------------------------------------------------------------------------MSAEEAEELAVKTAKELEINVCEKNELYVLDDKNTLIFPEDDTDKQNDTYVFFMFPDVYGIPYSRCPENEALTGYANQENHLVIAMDEK-GISFLDIPPLYDWVETTETGEILHPSSILSKEVDKLKKYVTSGDIEVSEISLEYMLFADKNETYDIKPVWVVYYYQNQLVTGENSYTQKMALYDVYDAYTGEEYRI--


General information:
TITO was launched using:
RESULT:

Template: 5COZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 579 27386 47.30 163.99
target 2D structure prediction score : 0.47
Monomeric hydrophicity matching model chain A : 0.59

3D Compatibility (PKB) : 47.30
2D Compatibility (Sec. Struct. Predict.) : 0.47
1D Compatibility (Hydrophobicity) : 0.59
QMean score : 0.343

(partial model without unconserved sides chains):
PDB file : Tito_5COZ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5COZ-query.scw
PDB file : Tito_Scwrl_5COZ.pdb: